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    XTH33 xyloglucan:xyloglucosyl transferase 33 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837596, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XTH33
    Official Full Name
    xyloglucan:xyloglucosyl transferase 33
    Primary source
    TAIR:AT1G10550
    Locus tag
    AT1G10550
    See related
    Araport:AT1G10550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10O24.17; T10O24_17; XET; XYLOGLUCAN ENDOTRANSGLYCOSYLASE; xyloglucan:xyloglucosyl transferase 33; XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33
    Summary
    Encodes a membrane-localized protein that is predicted to function during cell wall modification.Overexpression of XTH33 results in abnormal cell morphology. It's expression is under epigenetic control by ATX1.
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    Genomic context

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    See XTH33 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (3479066..3481041, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene nucleobase-ascorbate transporter 8 Neighboring gene plant U-box 18 Neighboring gene Cysteine proteinases superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Wall-modifying genes regulated by the Arabidopsis homolog of trithorax, ATX1: repression of the XTH33 gene as a test case. Ndamukong I, et al. Plant J, 2009 May. PMID 19154201
    2. Involvement of the xyloglucan endotransglycosylase/hydrolases encoded by celery XTH1 and Arabidopsis XTH33 in the phloem response to aphids. Divol F, et al. Plant Cell Environ, 2007 Feb. PMID 17238910
    3. Ride to cell wall: Arabidopsis XTH11, XTH29 and XTH33 exhibit different secretion pathways and responses to heat and drought stress. De Caroli M, et al. Plant J, 2021 Jul. PMID 33932060, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Ride to cell wall: Arabidopsis XTH11, XTH29 and XTH33 exhibit different secretion pathways and responses to heat and drought stress.
      Title: Ride to cell wall: Arabidopsis XTH11, XTH29 and XTH33 exhibit different secretion pathways and responses to heat and drought stress.
    2. XTH33 is localized at the cell wall in association with the plasma membrane, and is regulated by ATX1.
      Title: Wall-modifying genes regulated by the Arabidopsis homolog of trithorax, ATX1: repression of the XTH33 gene as a test case.
    3. Aphids settled preferentially on the mutant rather than on the wild type; this suggests that cell wall modification can alter the preference of aphids for a particular plant.
      Title: Involvement of the xyloglucan endotransglycosylase/hydrolases encoded by celery XTH1 and Arabidopsis XTH33 in the phloem response to aphids.
    Submit: New GeneRIF Correction

    General gene information

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    NM_100930.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within plant-type cell wall modification involved in multidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    xyloglucan:xyloglucosyl transferase 33
    NP_172525.1
    • xyloglucan:xyloglucosyl transferase 33 (XTH33); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 28 (TAIR:AT1G14720.1); Has 2022 Blast hits to 2008 proteins in 287 species: Archae - 0; Bacteria - 257; Metazoa - 0; Fungi - 351; Plants - 1343; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3479066..3481041 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100930.4 → NP_172525.1  xyloglucan:xyloglucosyl transferase 33 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172525.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LC45, Q9XIJ7
      UniProtKB/TrEMBL
      A0A178W7W3
      Conserved Domains (2) summary
      PLN03161
      Location:38 → 309
      PLN03161; Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
      cd02176
      Location:38 → 309
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LC45.2

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