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    WRKY56 WRKY DNA-binding protein 56 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842703, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WRKY56
    Official Full Name
    WRKY DNA-binding protein 56
    Primary source
    TAIR:AT1G64000
    Locus tag
    AT1G64000
    See related
    Araport:AT1G64000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATWRKY56; F22C12.23; F22C12_23; WRKY DNA-binding protein 56
    Summary
    member of WRKY Transcription Factor; Group II-c
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    Genomic context

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    See WRKY56 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (23747304..23749053)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene isoprenoid F Neighboring gene D111/G-patch domain-containing protein Neighboring gene ncRNA Neighboring gene sporulation 11-2 Neighboring gene Serine protease inhibitor (SERPIN) family protein Neighboring gene Serine protease inhibitor (SERPIN) family protein Neighboring gene serpin 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The WRKY superfamily of plant transcription factors. Eulgem T, et al. Trends Plant Sci, 2000 May. PMID 10785665
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105073.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WRKY DNA-binding protein 56
    NP_176583.1
    • WRKY DNA-binding protein 56 (WRKY56); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 24 (TAIR:AT5G41570.1); Has 3510 Blast hits to 3053 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3491; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23747304..23749053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105073.2 → NP_176583.1  WRKY DNA-binding protein 56 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176583.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9F6, Q8VWQ4, Q9SH51
      UniProtKB/TrEMBL
      A0A178WLH7, A0A5S9WS55, A0A654EM87, Q29PS1
      Conserved Domains (1) summary
      pfam03106
      Location:114 → 171
      WRKY; WRKY DNA -binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VWQ4.1

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