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    Prolyl oligopeptidase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843946, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Prolyl oligopeptidase family protein
    Primary source
    TAIR:AT1G76140
    Locus tag
    AT1G76140
    See related
    Araport:AT1G76140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23E18.8; T23E18_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (28571119..28575036)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene enoyl-CoA hydratase 2 Neighboring gene SKU5 similar 5 Neighboring gene 2-thiocytidine tRNA biosynthesis protein, TtcA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A possible role of prolyl oligopeptidase during Linum usitatissimum (flax) seed development. Gutierrez L, et al. Plant Biol (Stuttg), 2008 May. PMID 18426487
    2. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. seed expression not specific to early development
      Title: A possible role of prolyl oligopeptidase during Linum usitatissimum (flax) seed development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001124134.2
    NM_106263.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    Prolyl oligopeptidase family protein
    NP_001117606.1
    • Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G20380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_177741.3
    • Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G20380.1); Has 8127 Blast hits to 8050 proteins in 1368 species: Archae - 105; Bacteria - 3923; Metazoa - 339; Fungi - 43; Plants - 244; Viruses - 0; Other Eukaryotes - 3473 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28571119..28575036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001124134.2 → NP_001117606.1  Prolyl oligopeptidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117606.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WB94, F4I2A1
      Conserved Domains (2) summary
      pfam00326
      Location:560 → 789
      Peptidase_S9; Prolyl oligopeptidase family
      pfam02897
      Location:78 → 501
      Peptidase_S9_N; Prolyl oligopeptidase, N-terminal beta-propeller domain

    2. NM_106263.4 → NP_177741.3  Prolyl oligopeptidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177741.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WB94, F4I2A0
      Conserved Domains (2) summary
      pfam00326
      Location:560 → 792
      Peptidase_S9; Prolyl oligopeptidase family
      pfam02897
      Location:78 → 501
      Peptidase_S9_N; Prolyl oligopeptidase, N-terminal beta-propeller domain
    Nucleotide Protein
    Heading Accession and Version

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