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    CLPR1 CLP protease proteolytic subunit 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841420, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CLPR1
    Official Full Name
    CLP protease proteolytic subunit 1
    Primary source
    TAIR:AT1G49970
    Locus tag
    AT1G49970
    See related
    Araport:AT1G49970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CLP protease proteolytic subunit 1; F2J10.14; F2J10_14; NCLPP5; NUCLEAR CLPP 5; SUPPRESSOR OF VARIEGATION 2; SVR2
    Summary
    Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
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    Genomic context

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    See CLPR1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (18501570..18504654, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene telomere repeat binding factor 1 Neighboring gene Xanthine/uracil permease family protein Neighboring gene photosystem I reaction center subunit N Neighboring gene DNA/RNA polymerases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A chloroplastic RNA-binding protein is a new member of the PPR family. Lahmy S, et al. FEBS Lett, 2000 Sep 1. PMID 11034340
    2. Identification of new protein substrates for the chloroplast ATP-dependent Clp protease supports its constitutive role in Arabidopsis. Stanne TM, et al. Biochem J, 2009 Jan 1. PMID 18754756
    3. An Arabidopsis thaliana virescent mutant reveals a role for ClpR1 in plastid development. Koussevitzky S, et al. Plant Mol Biol, 2007 Jan. PMID 17009084
    4. Identification of clp genes expressed in senescing Arabidopsis leaves. Nakabayashi K, et al. Plant Cell Physiol, 1999 May. PMID 10427773
    5. A var2 leaf variegation suppressor locus, SUPPRESSOR OF VARIEGATION3, encodes a putative chloroplast translation elongation factor that is important for chloroplast development in the cold. Liu X, et al. BMC Plant Biol, 2010 Dec 28. PMID 21187014, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103884.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of chloroplastic endopeptidase Clp complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in plastid stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CLP protease proteolytic subunit 1
    NP_564560.1
    • CLP protease proteolytic subunit 1 (CLPR1); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.2); Has 11692 Blast hits to 11690 proteins in 2932 species: Archae - 0; Bacteria - 7285; Metazoa - 144; Fungi - 71; Plants - 1058; Viruses - 0; Other Eukaryotes - 3134 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18501570..18504654 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103884.4 → NP_564560.1  CLP protease proteolytic subunit 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564560.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XJ35
      UniProtKB/TrEMBL
      A0A178W3A3, A0A5S9WKL7
      Conserved Domains (1) summary
      cd07017
      Location:171 → 351
      S14_ClpP_2; Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XJ35.1

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