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    UBP1B oligouridylate binding protein 1B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838309, updated on 18-Sep-2024

    Summary

    Official Symbol
    UBP1B
    Official Full Name
    oligouridylate binding protein 1B
    Primary source
    TAIR:AT1G17370
    Locus tag
    AT1G17370
    See related
    Araport:AT1G17370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28G4.17; oligouridylate binding protein 1B
    Summary
    Encodes an RNA#Aeibinding protein involved in stress granule formation. Regulated by a transposable element small RNA.
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    Genomic context

    See UBP1B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (5951542..5955143, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase intermediate-associated protein 30 Neighboring gene LOW protein: protein phosphatase 1 regulatory subunit-like protein Neighboring gene ncRNA Neighboring gene jasmonate-zim-domain protein 5 Neighboring gene pseudo

    Interactions

    General gene information

    NM_001123829.1
    NM_101598.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    NOT located_in cytosol PubMed 

    General protein information

    Preferred Names
    oligouridylate binding protein 1B
    NP_001117301.1
    • oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_564018.1
    • oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 681 Blast hits to 681 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 681; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5951542..5955143 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101598.3 → NP_564018.1  oligouridylate binding protein 1B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564018.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LNS1, Q9LQI9
      UniProtKB/TrEMBL
      A0A178WA94, A0A5S9UUW5, A0A654EFP5
      Conserved Domains (3) summary
      cd12614
      Location:56 → 126
      RRM1_PUB1; RNA recognition motif 1 (RRM1) found in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins
      cd12619
      Location:138 → 217
      RRM2_PUB1; RNA recognition motif 2 (RRM2) found in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins
      cd12622
      Location:260 → 336
      RRM3_PUB1; RNA recognition motif 3 (RRM3) found in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins
    2. NM_001123829.1 → NP_001117301.1  oligouridylate binding protein 1B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117301.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WA94, B3H4Q3
      Conserved Domains (4) summary
      cd12352
      Location:56 → 126
      RRM1_TIA1_like; RNA recognition motif 1 in granule-associated RNA binding proteins p40-TIA-1 and TIAR
      cd12354
      Location:257 → 332
      RRM3_TIA1_like; RNA recognition motif 2 in granule-associated RNA binding proteins (p40-TIA-1 and TIAR), and yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
      cd12619
      Location:140 → 214
      RRM2_PUB1; RNA recognition motif 2 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins
      TIGR01661
      Location:65 → 328
      ELAV_HUD_SF; ELAV/HuD family splicing factor
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