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    JAZ5 jasmonate-zim-domain protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838310, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JAZ5
    Official Full Name
    jasmonate-zim-domain protein 5
    Primary source
    TAIR:AT1G17380
    Locus tag
    AT1G17380
    See related
    Araport:AT1G17380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28G4.16; jasmonate-zim-domain protein 5; TIFY11A
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    Genomic context

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    See JAZ5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (5955155..5957511, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene LOW protein: protein phosphatase 1 regulatory subunit-like protein Neighboring gene ncRNA Neighboring gene oligouridylate binding protein 1B Neighboring gene pseudo Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The bacterial effector HopX1 targets JAZ transcriptional repressors to activate jasmonate signaling and promote infection in Arabidopsis. Gimenez-Ibanez S, et al. PLoS Biol, 2014 Feb. PMID 24558350, Free PMC Article
    2. Identification and validation of the wound and insect bite early inducible promoter from Arabidopsis thaliana. Mishra DK, et al. 3 Biotech, 2022 Mar. PMID 35251877, Free PMC Article
    3. Change of a conserved amino acid in the MYC2 and MYC3 transcription factors leads to release of JAZ repression and increased activity. Goossens J, et al. New Phytol, 2015 Jun. PMID 25817565
    4. TIME FOR COFFEE represses accumulation of the MYC2 transcription factor to provide time-of-day regulation of jasmonate signaling in Arabidopsis. Shin J, et al. Plant Cell, 2012 Jun. PMID 22693280, Free PMC Article
    5. JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling. Thines B, et al. Nature, 2007 Aug 9. PMID 17637677

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001332300.1
    NM_001332301.1
    NM_101599.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    jasmonate-zim-domain protein 5
    NP_564019.1
    • jasmonate-zim-domain protein 5 (JAZ5); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 6 (TAIR:AT1G72450.1); Has 301 Blast hits to 296 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5955155..5957511 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101599.3 → NP_564019.1  jasmonate-zim-domain protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564019.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAR9, Q9LDU5
      UniProtKB/TrEMBL
      A0A178WEM9
      Conserved Domains (2) summary
      pfam06200
      Location:93 → 125
      tify; tify domain
      pfam09425
      Location:182 → 205
      CCT_2; Divergent CCT motif

    2. NM_001332300.1 → NP_001320905.1  jasmonate-zim-domain protein 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGI7, A0A1P8APG1

    3. NM_001332301.1 → NP_001320904.1  jasmonate-zim-domain protein 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AP92
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LDU5.1

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