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    winged-helix DNA-binding transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837187, updated on 18-Sep-2024

    Summary

    Official Full Name
    winged-helix DNA-binding transcription factor family protein
    Primary source
    TAIR:AT1G06760
    Locus tag
    AT1G06760
    See related
    Araport:AT1G06760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4H5.15; F4H5_15
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (2076504..2077767, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pfkB-like carbohydrate kinase family protein Neighboring gene MuDR family transposase Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene DREB2A-interacting protein 1 Neighboring gene galacturonosyltransferase 6

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_100553.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    winged-helix DNA-binding transcription factor family protein
    NP_172161.1
    • winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1); Has 20265 Blast hits to 10904 proteins in 1494 species: Archae - 37; Bacteria - 8386; Metazoa - 4718; Fungi - 1128; Plants - 980; Viruses - 120; Other Eukaryotes - 4896 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2076504..2077767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100553.3NP_172161.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172161.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P26568
      UniProtKB/TrEMBL
      A0A178W387
      Conserved Domains (1) summary
      smart00526
      Location:60124
      H15; Domain in histone families 1 and 5