U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    nodulin MtN21 /EamA-like transporter family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837199, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    nodulin MtN21 /EamA-like transporter family protein
    Primary source
    TAIR:AT1G06890
    Locus tag
    AT1G06890
    See related
    Araport:AT1G06890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4H5.5; F4H5_5
    Summary
    Nucleotide/sugar transporter family protein
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (2111323..2114686, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene tRNA-Gly Neighboring gene Insulinase (Peptidase family M16) family protein Neighboring gene TRF-like 7

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Three UDP-xylose transporters participate in xylan biosynthesis by conveying cytosolic UDP-xylose into the Golgi lumen in Arabidopsis. Zhao X, et al. J Exp Bot, 2018 Feb 23. PMID 29300997, Free PMC Article
    2. Identification and Characterization of a Golgi-Localized UDP-Xylose Transporter Family from Arabidopsis. Ebert B, et al. Plant Cell, 2015 Apr. PMID 25804536, Free PMC Article
    3. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
    4. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The results underpin the physiological roles of the UXT family in xylan biosynthesis and provide novel insights into the nucleotide sugar metabolism and trafficking in plants. [UXT3]
      Title: Three UDP-xylose transporters participate in xylan biosynthesis by conveying cytosolic UDP-xylose into the Golgi lumen in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001084002.2
    NM_001197997.2
    NM_001331672.1
    NM_100564.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables UDP-xylose transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables antiporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within UDP-xylose transmembrane transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endosome HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in trans-Golgi network HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nodulin MtN21 /EamA-like transporter family protein
    NP_001077471.1
    • nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2); Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2; Bacteria - 105; Metazoa - 662; Fungi - 435; Plants - 1177; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
    NP_001184926.1
    • nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2).
    NP_172172.2
    • nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2); Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2; Bacteria - 105; Metazoa - 662; Fungi - 435; Plants - 1177; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2111323..2114686 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100564.5 → NP_172172.2  nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172172.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A0E3MVM2, Q8RXL8, Q9M9Z3
      UniProtKB/TrEMBL
      A0A178WCK2, A0A7G2ED13
      Conserved Domains (1) summary
      cl26744
      Location:38 → 294
      TPT; Triose-phosphate Transporter family

    2. NM_001331672.1 → NP_001320783.1  nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANY9, A0A7G2DUY9

    3. NM_001197997.2 → NP_001184926.1  nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184926.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9SZV5, A0A7G2DTJ0, F4HNU3
      Conserved Domains (1) summary
      cl26744
      Location:38 → 294
      TPT; Triose-phosphate Transporter family

    4. NM_001084002.2 → NP_001077471.1  nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077471.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A0E3MVM2, Q8RXL8, Q9M9Z3
      UniProtKB/TrEMBL
      A0A178WCK2, A0A7G2ED13
      Conserved Domains (1) summary
      cl26744
      Location:38 → 294
      TPT; Triose-phosphate Transporter family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RXL8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.