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    Disease resistance protein (CC-NBS-LRR class) family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838159, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Disease resistance protein (CC-NBS-LRR class) family
    Primary source
    TAIR:AT1G15890
    Locus tag
    AT1G15890
    See related
    Araport:AT1G15890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7H2.22; F7H2_22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (5461309..5464241)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Mitochondrial glycoprotein family protein Neighboring gene golgi snare 11 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene XH/XS domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional analysis of plant NB-LRR gene L3 by using E. coli. Yang Y, et al. Biochem Biophys Res Commun, 2016 Sep 30. PMID 27586278
    2. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332190.1
    NM_101457.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Disease resistance protein (CC-NBS-LRR class) family
    NP_173041.1
    • Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 17730 Blast hits to 16510 proteins in 695 species: Archae - 12; Bacteria - 829; Metazoa - 2844; Fungi - 202; Plants - 13567; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5461309..5464241
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101457.3 → NP_173041.1  Disease resistance protein (CC-NBS-LRR class) family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173041.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I187, Q9LMP6
      Conserved Domains (3) summary
      sd00031
      Location:539 → 584
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:561 → 579
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:158 → 436
      NB-ARC; NB-ARC domain

    2. NM_001332190.1 → NP_001322964.1  Disease resistance protein (CC-NBS-LRR class) family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVK4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LMP6.2

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