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    mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822538, updated on 18-Sep-2024

    Summary

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    Official Full Name
    mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)
    Primary source
    TAIR:AT3G28980
    Locus tag
    AT3G28980
    See related
    Araport:AT3G28980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (10993117..10995006, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene defective in cullin neddylation protein (DUF298) Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene Plant protein 1589 of unknown function

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338996.1
    NM_001338997.1
    NM_113819.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)
    NP_189540.2
    • Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28810.1); Has 19096 Blast hits to 8873 proteins in 1199 species: Archae - 74; Bacteria - 6296; Metazoa - 3722; Fungi - 2666; Plants - 452; Viruses - 176; Other Eukaryotes - 5710 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10993117..10995006 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338994.1 → NP_001326979.1  mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQX1, A0A654FI32

    2. NM_001338995.1 → NP_001326978.1  mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQX0, A0A654FI32

    3. NM_113819.3 → NP_189540.2  mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189540.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XGM3, Q9MBG7
      Conserved Domains (1) summary
      pfam06746
      Location:73 → 185
      DUF1216; Protein of unknown function (DUF1216)

    4. NM_001338997.1 → NP_001326976.1  mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQW8, A0A654FI32

    5. NM_001338996.1 → NP_001326977.1  mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQW9, A0A5S9XGM3
    Nucleotide Protein
    Heading Accession and Version

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