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    Actin cross-linking protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839599, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Actin cross-linking protein
    Primary source
    TAIR:AT1G27100
    Locus tag
    AT1G27100
    See related
    Araport:AT1G27100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7N9.16; T7N9_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (9407085..9411368, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene 5'-AMP-activated protein kinase-like protein Neighboring gene nitrate transporter 1.6 Neighboring gene glycine-rich protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Galactosyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_102472.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Actin cross-linking protein
    NP_174030.2
    • Actin cross-linking protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF569) (TAIR:AT1G69890.1); Has 362 Blast hits to 223 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 10; Plants - 341; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9407085..9411368 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102472.4 → NP_174030.2  Actin cross-linking protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174030.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9W2L6, A0A654EEY7, Q0WQH3
      Conserved Domains (2) summary
      pfam04601
      Location:1 → 144
      DUF569; Domain of unknown function (DUF569)
      cl23781
      Location:227 → 368
      Fascin; Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an ...
    Nucleotide Protein
    Heading Accession and Version

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