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    3-dehydroquinate synthase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822508, updated on 18-Sep-2024

    Summary

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    Official Full Name
    3-dehydroquinate synthase
    Primary source
    TAIR:AT3G28760
    Locus tag
    AT3G28760
    See related
    Araport:AT3G28760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (10792933..10795385, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene high mobility group Neighboring gene Cytochrome P450 superfamily protein Neighboring gene uncharacterized protein Neighboring gene transmembrane protein, putative (DUF1216) Neighboring gene transmembrane protein, putative (DUF1216)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The female germ unit is essential for pollen tube funicular guidance in Arabidopsis thaliana. Wang X, et al. New Phytol, 2023 Apr. PMID 36527238
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The female germ unit is essential for pollen tube funicular guidance in Arabidopsis thaliana.
      Title: The female germ unit is essential for pollen tube funicular guidance in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001035714.2
    NM_113797.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3-dehydroquinate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    3-dehydroquinate synthase
    NP_001030791.1
    • CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_189518.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 390 Blast hits to 390 proteins in 131 species: Archae - 144; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10792933..10795385 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001035714.2 → NP_001030791.1  3-dehydroquinate synthase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030791.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLQ7, A0A654FCZ2, B9DHA5
      Conserved Domains (1) summary
      pfam01959
      Location:93 → 444
      DHQS; 3-dehydroquinate synthase II (EC 1.4.1.24)

    2. NM_113797.4 → NP_189518.2  3-dehydroquinate synthase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189518.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLQ7, Q84JW0
      Conserved Domains (1) summary
      pfam01959
      Location:71 → 422
      DHQS; 3-dehydroquinate synthase (EC 4.6.1.3)
    Nucleotide Protein
    Heading Accession and Version

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