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    PSD3 phosphatidylserine decarboxylase 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828703, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PSD3
    Official Full Name
    phosphatidylserine decarboxylase 3
    Primary source
    TAIR:AT4G25970
    Locus tag
    AT4G25970
    See related
    Araport:AT4G25970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20B18.80; F20B18_80; phosphatidylserine decarboxylase 3
    Summary
    Encodes the major form of the two non-mitochondrail phosphatidylserine decarboxylase. Located at the ER.
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    Genomic context

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    See PSD3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    21
    Sequence:
    Chromosome: 4; NC_003075.7 (13184114..13189435)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene vacuolar ATP synthase G3 Neighboring gene P-glycoprotein 2 Neighboring gene peroxidase superfamily protein Neighboring gene CCT motif family protein Neighboring gene RNA-binding KH domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deficiency in phosphatidylserine decarboxylase activity in the psd1 psd2 psd3 triple mutant of Arabidopsis affects phosphatidylethanolamine accumulation in mitochondria. Nerlich A, et al. Plant Physiol, 2007 Jun. PMID 17449644, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A significant amount of mitochondrial phosphatidylethanolamine is derived from the phosphatidylserine decarboxylase reaction in the endomembrane system.
      Title: Deficiency in phosphatidylserine decarboxylase activity in the psd1 psd2 psd3 triple mutant of Arabidopsis affects phosphatidylethanolamine accumulation in mitochondria.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_118730.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylserine decarboxylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phosphatidylserine decarboxylase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylethanolamine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylserine decarboxylase 3
    NP_567736.3
    • phosphatidylserine decarboxylase 3 (PSD3); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: N-terminal protein myristoylation, phospholipid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Phosphatidylserine decarboxylase-related (InterPro:IPR003817), EF-HAND 2 (InterPro:IPR018249), Phosphatidylserine decarboxylase (InterPro:IPR005221); BEST Arabidopsis thaliana protein match is: phosphatidylserine decarboxylase 2 (TAIR:AT5G57190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13184114..13189435
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118730.4 → NP_567736.3  phosphatidylserine decarboxylase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567736.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4GNA8, Q9SZH1
      UniProtKB/TrEMBL
      A0A178UYW2, A0A5S9XWT3, A0A654FSU3
      Conserved Domains (1) summary
      PLN02964
      Location:1 → 635
      PLN02964; phosphatidylserine decarboxylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4GNA8.1

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