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    emb1027 Arginyl-tRNA synthetase, class Ic [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828736, updated on 18-Sep-2024

    Summary

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    Official Symbol
    emb1027
    Official Full Name
    Arginyl-tRNA synthetase, class Ic
    Primary source
    TAIR:AT4G26300
    Locus tag
    AT4G26300
    See related
    Araport:AT4G26300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo defective 1027; T25K17.110; T25K17_110
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    Genomic context

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    See emb1027 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Sequence:
    Chromosome: 4; NC_003075.7 (13307977..13313109, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene elongation factor P (EF-P) family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana. Duchêne AM, et al. Proc Natl Acad Sci U S A, 2005 Nov 8. PMID 16251277, Free PMC Article
    2. Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis. Berg M, et al. Plant J, 2005 Dec. PMID 16297076
    3. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001341791.1
    NM_001341792.1
    NM_001341793.1
    NM_001341794.1
    NM_118763.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables arginine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in arginyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Arginyl-tRNA synthetase, class Ic
    NP_194360.1
    • embryo defective 1027 (emb1027); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT1G66530.1); Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263; Bacteria - 5535; Metazoa - 273; Fungi - 189; Plants - 85; Viruses - 3; Other Eukaryotes - 3070 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13307977..13313109 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118763.3 → NP_194360.1  Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194360.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23247
      UniProtKB/TrEMBL
      A0A7G2F7I9
      Conserved Domains (4) summary
      cd07956
      Location:489 → 639
      Anticodon_Ia_Arg; Anticodon-binding domain of arginyl tRNA synthetases
      cd00671
      Location:182 → 449
      ArgRS_core; catalytic core domain of arginyl-tRNA synthetases
      PLN02286
      Location:65 → 642
      PLN02286; arginine-tRNA ligase
      pfam03485
      Location:76 → 154
      Arg_tRNA_synt_N; Arginyl tRNA synthetase N terminal domain

    2. NM_001341794.1 → NP_001329503.1  Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7W8, A0A7G2F7I9
      Conserved Domains (1) summary
      PLN02286
      Location:76 → 653
      PLN02286; arginine-tRNA ligase

    3. NM_001341793.1 → NP_001329502.1  Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2R8, A0A384KS52, A0A7G2F7I9, Q7DLG4

    4. NM_001341792.1 → NP_001329501.1  Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7W5, A0A7G2F7I9

    5. NM_001341791.1 → NP_001329500.1  Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7W2, A0A654FSX8, A0A7G2F7I9
      Conserved Domains (1) summary
      PLN02286
      Location:39 → 616
      PLN02286; arginine-tRNA ligase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23247.1

    Gene LinkOut

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