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    BT5 BTB and TAZ domain protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829915, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BT5
    Official Full Name
    BTB and TAZ domain protein 5
    Primary source
    TAIR:AT4G37610
    Locus tag
    AT4G37610
    See related
    Araport:AT4G37610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BTB and TAZ domain protein 5; F19F18.100; F19F18_100
    Summary
    BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.
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    Genomic context

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    See BT5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (17670481..17672353, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene cyclin d5;1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development. Robert HS, et al. Plant J, 2009 Apr. PMID 19054356
    2. The transactivation domain within cysteine/histidine-rich region 1 of CBP comprises two novel zinc-binding modules. Newton AL, et al. J Biol Chem, 2000 May 19. PMID 10748221
    3. A novel family of Ca2+/calmodulin-binding proteins involved in transcriptional regulation: interaction with fsh/Ring3 class transcription activators. Du L, et al. Plant Mol Biol, 2004 Mar. PMID 15316289
    4. Arabidopsis has two redundant Cullin3 proteins that are essential for embryo development and that interact with RBX1 and BTB proteins to form multisubunit E3 ubiquitin ligase complexes in vivo. Figueroa P, et al. Plant Cell, 2005 Apr. PMID 15772280, Free PMC Article
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_119924.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calmodulin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to hydrogen peroxide IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salicylic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    BTB and TAZ domain protein 5
    NP_568031.1
    • BTB and TAZ domain protein 5 (BT5); CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB and TAZ domain protein 4 (TAIR:AT5G67480.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17670481..17672353 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119924.3 → NP_568031.1  BTB and TAZ domain protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568031.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6EJ98, Q8GW52, Q8LFA7, Q9SZF4
      UniProtKB/TrEMBL
      A0A654FWH5
      Conserved Domains (4) summary
      smart00225
      Location:56 → 155
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00551
      Location:233 → 324
      ZnF_TAZ; TAZ zinc finger, present in p300 and CBP
      cd14734
      Location:156 → 216
      SPOP_C; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
      cl02518
      Location:46 → 148
      BTB; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6EJ98.1

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