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    nucleoporin (DUF3414) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830031, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nucleoporin (DUF3414)
    Primary source
    TAIR:AT4G38760
    Locus tag
    AT4G38760
    See related
    Araport:AT4G38760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9A14.40; T9A14_40
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    32
    Sequence:
    Chromosome: 4; NC_003075.7 (18084652..18096218, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene magnesium transporter, putative (DUF803) Neighboring gene rotamase CYP 1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene proline-rich protein 4 Neighboring gene pre-mRNA-processing-splicing factor-like protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_120036.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nucleoporin (DUF3414)
    NP_195587.5
    • Protein of unknown function (DUF3414); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3414 (InterPro:IPR021827); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10845.1); Has 113 Blast hits to 108 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18084652..18096218 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120036.6 → NP_195587.5  nucleoporin (DUF3414) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195587.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWW7, A0A654FWR1, F4JUG3
      Conserved Domains (1) summary
      cl29134
      Location:36 → 770
      Nup192; Nuclear pore complex scaffold, nucleoporins 186/192/205
    Nucleotide Protein
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