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    YCF36, putative (DUF1230) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831057, updated on 18-Sep-2024

    Summary

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    Official Full Name
    YCF36, putative (DUF1230)
    Primary source
    TAIR:AT5G11840
    Locus tag
    AT5G11840
    See related
    Araport:AT5G11840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14F18.10; F14F18_10
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (3813302..3814906, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene rhomboid family protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene Protein kinase superfamily protein Neighboring gene SCP1-like small phosphatase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343215.1
    NM_001343216.1
    NM_001343217.1
    NM_121222.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    YCF36, putative (DUF1230)
    NP_196745.4
    • Protein of unknown function (DUF1230); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1230 (InterPro:IPR009631); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1230) (TAIR:AT5G67370.1); Has 313 Blast hits to 313 proteins in 90 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3813302..3814906 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121222.5 → NP_196745.4  YCF36, putative (DUF1230) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196745.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y3E3, A0A654G0C8, B6IDH6
      Conserved Domains (1) summary
      pfam06799
      Location:63 → 203
      DUF1230; Protein of unknown function (DUF1230)

    2. NM_001343215.1 → NP_001331149.1  YCF36, putative (DUF1230) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHC6, A0A1P8BCZ9

    3. NM_001343216.1 → NP_001331150.1  YCF36, putative (DUF1230) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHC6, A0A1P8BD05

    4. NM_001343217.1 → NP_001331148.1  YCF36, putative (DUF1230) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHC6, A0A1P8BD02
    Nucleotide Protein
    Heading Accession and Version

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