U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ATSRL1 PRP38 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833711, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ATSRL1
    Official Full Name
    PRP38 family protein
    Primary source
    TAIR:AT5G37370
    Locus tag
    AT5G37370
    See related
    Araport:AT5G37370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MNJ8.19; MNJ8_19
    Summary
    encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ATSRL1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (14812570..14816628, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene LOW protein: ammonium transporter 1-like protein Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Expression of Arabidopsis SR-like splicing proteins confers salt tolerance to yeast and transgenic plants. Forment J, et al. Plant J, 2002 Jun. PMID 12047626
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001161281.2
    NM_001203501.1
    NM_001344183.1
    NM_001344184.1
    NM_001344185.1
    NM_001344187.1
    NM_001344188.1
    NM_001344189.1
    NM_001344190.1
    NM_123096.3
    NM_180770.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to lithium ion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    PRP38 family protein
    NP_001190430.1
    • ATSRL1; FUNCTIONS IN: binding; INVOLVED IN: response to salt stress, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037).
    NP_001318686.1
    • ATSRL1; FUNCTIONS IN: binding; INVOLVED IN: response to salt stress, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037); Has 229 Blast hits to 229 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
    NP_198553.2
    • ATSRL1; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037); Has 23975 Blast hits to 13028 proteins in 584 species: Archae - 8; Bacteria - 808; Metazoa - 13732; Fungi - 3147; Plants - 2050; Viruses - 100; Other Eukaryotes - 4130 (source: NCBI BLink).
    NP_851101.1
    • ATSRL1; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037); Has 24000 Blast hits to 13040 proteins in 580 species: Archae - 8; Bacteria - 803; Metazoa - 13736; Fungi - 3156; Plants - 2052; Viruses - 103; Other Eukaryotes - 4142 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      14812570..14816628 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344186.1 → NP_001330326.1  PRP38 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPN3, C0Z324

    2. NM_180770.2 → NP_851101.1  PRP38 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851101.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWB1, Q9FHS8
      UniProtKB/TrEMBL
      A0A5S9Y932, A0A654G637
      Conserved Domains (2) summary
      pfam03371
      Location:4 → 165
      PRP38; PRP38 family
      pfam12871
      Location:178 → 260
      PRP38_assoc; Pre-mRNA-splicing factor 38-associated hydrophilic C-term

    3. NM_001203501.1 → NP_001190430.1  PRP38 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190430.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UN55, F4K753
      Conserved Domains (2) summary
      pfam03371
      Location:1 → 110
      PRP38; PRP38 family
      pfam12871
      Location:123 → 204
      PRP38_assoc; Pre-mRNA-splicing factor 38-associated hydrophilic C-term

    4. NM_001344187.1 → NP_001330327.1  PRP38 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPN3, C0Z324

    5. NM_001344188.1 → NP_001330328.1  PRP38 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPN3, C0Z324

    6. NM_123096.3 → NP_198553.2  PRP38 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198553.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWB1
      Conserved Domains (2) summary
      pfam03371
      Location:3 → 157
      PRP38; PRP38 family
      pfam12871
      Location:170 → 252
      PRP38_assoc; Pre-mRNA-splicing factor 38-associated hydrophilic C-term

    7. NM_001344185.1 → NP_001318686.1  PRP38 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPP8, A0A384KYH6, F4K754

    8. NM_001161281.2 → NP_001154753.1  PRP38 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154753.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPP8, A0A384KYH6, F4K754
      Conserved Domains (1) summary
      pfam03371
      Location:14 → 98
      PRP38; PRP38 family

    9. NM_001344183.1 → NP_001330331.1  PRP38 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAH8

    10. NM_001344190.1 → NP_001330330.1  PRP38 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAH8

    11. NM_001344184.1 → NP_001330325.1  PRP38 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQU3, A0A1P8BAH4, A0A384LME1

    12. NM_001344189.1 → NP_001330329.1  PRP38 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQU3, A0A1P8BAH4, A0A384LME1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RWB1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools