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    SGF29b SGF29 tudor-like domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834053, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SGF29b
    Official Full Name
    SGF29 tudor-like domain-containing protein
    Primary source
    TAIR:AT5G40550
    Locus tag
    AT5G40550
    See related
    Araport:AT5G40550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSGF29b; MNF13.7; MNF13_7; SaGa associated Factor 29 b
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    Genomic context

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    See SGF29b in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (16241009..16243410)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene tRNA-Asp Neighboring gene protease Do-like protein Neighboring gene Surfeit locus protein 2 (SURF2) Neighboring gene 20S proteasome beta subunit PBB2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana transcriptional co-activators ADA2b and SGF29a are implicated in salt stress responses. Kaldis A, et al. Planta, 2011 Apr. PMID 21193996
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Two orthologs of yeast SGF29 in Arabidopsis, SGF29a and SGF29b, may work in concert with ADA2b to regulate genes in response to abiotic stress. [AtSGF29b]
      Title: Arabidopsis thaliana transcriptional co-activators ADA2b and SGF29a are implicated in salt stress responses.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001203513.2
    NM_001344342.1
    NM_123419.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SGF29 tudor-like domain-containing protein
    NP_001190442.1
    • SGF29 tudor-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT3G27460.1).
    NP_198871.2
    • SGF29 tudor-like domain; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT3G27460.1); Has 300 Blast hits to 300 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 107; Plants - 46; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16241009..16243410
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344341.1 → NP_001330202.1  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BA25, A0A5S9Y9Q7, A0A654G6U4
      Conserved Domains (1) summary
      pfam07039
      Location:134 → 237
      DUF1325; SGF29 tudor-like domain

    2. NM_001203513.2 → NP_001190442.1  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190442.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UES1, F4KHE9
      Conserved Domains (1) summary
      pfam07039
      Location:131 → 265
      DUF1325; SGF29 tudor-like domain

    3. NM_001344342.1 → NP_001330201.1  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BA21, A0A654G6U4

    4. NM_123419.4 → NP_198871.2  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198871.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q500Z7, Q9FM42
      UniProtKB/TrEMBL
      A0A178UEP4
      Conserved Domains (1) summary
      pfam07039
      Location:134 → 268
      DUF1325; SGF29 tudor-like domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q500Z7.1

    Gene LinkOut

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