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    Glycosyl hydrolase family 47 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834391, updated on 18-Sep-2024

    Summary

    Official Full Name
    Glycosyl hydrolase family 47 protein
    Primary source
    TAIR:AT5G43710
    Locus tag
    AT5G43710
    See related
    Araport:AT5G43710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    mannosidase 4; MNS4; MQD19.4; MQD19_4
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    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 5
    Exon count:
    17
    Sequence:
    Chromosome: 5; NC_003076.8 (17552103..17556730, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene AUX/IAA transcriptional regulator family protein Neighboring gene rRNA-processing EFG1-like protein (DUF2361) Neighboring gene ncRNA Neighboring gene Disease resistance protein (CC-NBS-LRR class) family

    General gene information

    NM_001344500.1
    NM_123737.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha-mannosidase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within ERAD pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
     
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Glycosyl hydrolase family 47 protein
    NP_199184.1
    • Glycosyl hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 47 protein (TAIR:AT1G27520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17552103..17556730 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344499.1NP_001330909.1  Glycosyl hydrolase family 47 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BC90, A0A5S9YAL9
    2. NM_123737.3NP_199184.1  Glycosyl hydrolase family 47 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199184.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FG93
      UniProtKB/TrEMBL
      A0A654G7P4, A0A7G2FJY3
      Conserved Domains (1) summary
      pfam01532
      Location:47473
      Glyco_hydro_47; Glycosyl hydrolase family 47
    3. NM_001344500.1NP_001330908.1  Glycosyl hydrolase family 47 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BC88, A0A5S9YAL9