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    auxin canalization protein (DUF828) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834792, updated on 18-Sep-2024

    Summary

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    Official Full Name
    auxin canalization protein (DUF828)
    Primary source
    TAIR:AT5G47440
    Locus tag
    AT5G47440
    See related
    Araport:AT5G47440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MNJ7.2; MNJ7_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (19243531..19245648, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Tryptophan RNA-binding attenuator protein-like protein Neighboring gene DWNN domain, a CCHC-type zinc finger Neighboring gene formyltetrahydrofolate deformylase Neighboring gene pseudo Neighboring gene tonoplast intrinsic protein 2;3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Members of the Arabidopsis FORKED1-LIKE gene family act to localize PIN1 in developing veins. Prabhakaran Mariyamma N, et al. J Exp Bot, 2018 Sep 14. PMID 29982821, Free PMC Article
    2. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_124116.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    auxin canalization protein (DUF828)
    NP_199555.1
    • CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT4G17350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19243531..19245648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124116.3 → NP_199555.1  auxin canalization protein (DUF828) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199555.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G8V0, A0A7G2FIT1, Q9FGL4
      Conserved Domains (2) summary
      pfam05703
      Location:43 → 258
      Auxin_canalis; Auxin canalisation
      pfam08458
      Location:283 → 386
      PH_2; Plant pleckstrin homology-like region
    Nucleotide Protein
    Heading Accession and Version

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