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    small G protein family protein / RhoGAP family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836274, updated on 18-Sep-2024

    Summary

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    Official Full Name
    small G protein family protein / RhoGAP family protein
    Primary source
    TAIR:AT5G61530
    Locus tag
    AT5G61530
    See related
    Araport:AT5G61530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K11J9.10; K11J9_10
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (24741976..24744823)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene autophagy 3 (APG3) Neighboring gene GroES-like zinc-binding alcohol dehydrogenase family protein Neighboring gene Major facilitator superfamily protein Neighboring gene N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Neighboring gene ncRNA Neighboring gene U-box domain-containing protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203658.1
    NM_001345479.1
    NM_125546.3
    NM_203244.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    small G protein family protein / RhoGAP family protein
    NP_001190587.1
    • small G protein family protein / RhoGAP family protein; FUNCTIONS IN: Rho GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198).
    NP_568935.1
    • small G protein family protein / RhoGAP family protein; FUNCTIONS IN: Rho GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974973.1
    • small G protein family protein / RhoGAP family protein; FUNCTIONS IN: Rho GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24741976..24744823
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345478.1 → NP_001332246.1  small G protein family protein / RhoGAP family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGE3
      Conserved Domains (1) summary
      pfam00620
      Location:155 → 276
      RhoGAP; RhoGAP domain

    2. NM_125546.3 → NP_568935.1  small G protein family protein / RhoGAP family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568935.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E875, Q8LEE6, Q94AM7
      UniProtKB/TrEMBL
      A0A178UDF6, A0A5S9YGM0, A0A654GD45
      Conserved Domains (1) summary
      pfam00620
      Location:155 → 299
      RhoGAP; RhoGAP domain

    3. NM_203244.2 → NP_974973.1  small G protein family protein / RhoGAP family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974973.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDF6
      Conserved Domains (1) summary
      pfam00620
      Location:155 → 290
      RhoGAP; RhoGAP domain

    4. NM_001203658.1 → NP_001190587.1  small G protein family protein / RhoGAP family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190587.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDF6, F4K3I7
      Conserved Domains (1) summary
      pfam00620
      Location:155 → 299
      RhoGAP; RhoGAP domain

    5. NM_001345479.1 → NP_001332245.1  small G protein family protein / RhoGAP family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDF6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E875.2

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