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    NAC102 NAC domain containing protein 102 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836499, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NAC102
    Official Full Name
    NAC domain containing protein 102
    Primary source
    TAIR:AT5G63790
    Locus tag
    AT5G63790
    See related
    Araport:AT5G63790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ANAC102; MBK5.27; MBK5_27; NAC domain containing protein 102
    Summary
    Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings.
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    Genomic context

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    See NAC102 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (25526509..25528281, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene diacylglycerol kinase 2 Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene Glycosyl hydrolase family 35 protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis ANAC102, Chloroplastic or Nucleocytosolic Localization? Cresta A, et al. Genes (Basel), 2023 Feb 8. PMID 36833365, Free PMC Article
    2. The low-oxygen-induced NAC domain transcription factor ANAC102 affects viability of Arabidopsis seeds following low-oxygen treatment. Christianson JA, et al. Plant Physiol, 2009 Apr. PMID 19176720, Free PMC Article
    3. Two ATAF transcription factors ANAC102 and ATAF1 contribute to the suppression of cytochrome P450-mediated brassinosteroid catabolism in Arabidopsis. Peng H, et al. Physiol Plant, 2021 Jul. PMID 33491178
    4. The transcription factor NAC102 confers cadmium tolerance by regulating WAKL11 expression and cell wall pectin metabolism in Arabidopsis. Han GH, et al. J Integr Plant Biol, 2023 Oct. PMID 37565550
    5. NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis. Kunieda T, et al. Plant Cell, 2008 Oct. PMID 18849494, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis ANAC102, Chloroplastic or Nucleocytosolic Localization?
      Title: Arabidopsis ANAC102, Chloroplastic or Nucleocytosolic Localization?
    2. Two ATAF transcription factors ANAC102 and ATAF1 contribute to the suppression of cytochrome P450-mediated brassinosteroid catabolism in Arabidopsis.
      Title: Two ATAF transcription factors ANAC102 and ATAF1 contribute to the suppression of cytochrome P450-mediated brassinosteroid catabolism in Arabidopsis.
    3. ANAC102 is an important regulator of seed germination under flooding.
      Title: The low-oxygen-induced NAC domain transcription factor ANAC102 affects viability of Arabidopsis seeds following low-oxygen treatment.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001345612.1
    NM_125774.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    acts_upstream_of_or_within glucosinolate metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to hypoxia IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NAC domain containing protein 102
    NP_201184.2
    • NAC domain containing protein 102 (NAC102); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT5G08790.1); Has 3012 Blast hits to 3006 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3012; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25526509..25528281 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125774.3 → NP_201184.2  NAC domain containing protein 102 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201184.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H115, Q94AR7, Q9FFN5
      UniProtKB/TrEMBL
      A0A178U9T2, A0A5S9YGS9, A0A654GDR7
      Conserved Domains (1) summary
      pfam02365
      Location:53 → 94
      NAM; No apical meristem (NAM) protein

    2. NM_001345612.1 → NP_001330407.1  NAC domain containing protein 102 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAQ3, A0A5S9YGS9, A0A654GDR7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H115.1

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