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    RHC2A RING-H2 finger C2A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818556, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RHC2A
    Official Full Name
    RING-H2 finger C2A
    Primary source
    TAIR:AT2G39720
    Locus tag
    AT2G39720
    See related
    Araport:AT2G39720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RING-H2 finger C2A; RING-H2 FINGER PROTEIN RHC2A; T5I7.2; T5I7_2
    Summary
    Encodes a putative RING-H2 finger protein RHC2a.
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    Genomic context

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    See RHC2A in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (16566586..16568960, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ROTUNDIFOLIA like 8 Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene LYR family of Fe/S cluster biogenesis protein Neighboring gene rubisco activase Neighboring gene Nucleotidyltransferase family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001336792.1
    NM_129529.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING-H2 finger C2A
    NP_001318385.1
    • RING-H2 finger C2A (RHC2A); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 8622 Blast hits to 8603 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 2413; Fungi - 807; Plants - 4301; Viruses - 28; Other Eukaryotes - 1073 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16566586..16568960 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336792.1 → NP_001318385.1  RING-H2 finger C2A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22283
      UniProtKB/TrEMBL
      A0A178W067, A0A654F0D0
      Conserved Domains (3) summary
      cd16667
      Location:201 → 242
      RING-H2_RNF126_like; RING finger, H2 subclass, found in RING finger proteins RNF126, RNF115, and similar proteins
      pfam06547
      Location:273 → 354
      DUF1117; Protein of unknown function (DUF1117)
      pfam14369
      Location:5 → 34
      zinc_ribbon_9; zinc-ribbon

    2. NM_129529.4 → NP_030517.1  RING-H2 finger C2A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_030517.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22283
      UniProtKB/TrEMBL
      A0A178W067, A0A654F0D0
      Conserved Domains (3) summary
      cd16667
      Location:201 → 242
      RING-H2_RNF126_like; RING finger, H2 subclass, found in RING finger proteins RNF126, RNF115, and similar proteins
      pfam06547
      Location:273 → 354
      DUF1117; Protein of unknown function (DUF1117)
      pfam14369
      Location:5 → 34
      zinc_ribbon_9; zinc-ribbon
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22283.1

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