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    Tigd2 tigger transposable element derived 2 [ Mus musculus (house mouse) ]

    Gene ID: 68140, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tigd2provided by MGI
    Official Full Name
    tigger transposable element derived 2provided by MGI
    Primary source
    MGI:MGI:1915390
    See related
    Ensembl:ENSMUSG00000049232 AllianceGenome:MGI:1915390
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    3632410O17Rik
    Summary
    Predicted to enable DNA binding activity. Predicted to be active in nucleus. Orthologous to human TIGD2 (tigger transposable element derived 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 3.7), bladder adult (RPKM 2.3) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Tigd2 in Genome Data Viewer
    Location:
    6 B3; 6 28.29 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (59185855..59189018)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (59208870..59212033)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene TPX2, microtubule-associated protein homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_16030 Neighboring gene predicted gene, 22367 Neighboring gene STARR-seq mESC enhancer starr_16031 Neighboring gene STARR-positive B cell enhancer ABC_E4830 Neighboring gene STARR-positive B cell enhancer ABC_E8106 Neighboring gene STARR-seq mESC enhancer starr_16032 Neighboring gene STARR-seq mESC enhancer starr_16034 Neighboring gene STARR-seq mESC enhancer starr_16035 Neighboring gene STARR-seq mESC enhancer starr_16038 Neighboring gene STARR-seq mESC enhancer starr_16039 Neighboring gene GPRIN family member 3 Neighboring gene STARR-seq mESC enhancer starr_16041 Neighboring gene STARR-seq mESC enhancer starr_16042 Neighboring gene STARR-seq mESC enhancer starr_16043 Neighboring gene predicted gene, 35195 Neighboring gene predicted gene, 22622

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The sperm-associated antigen 6 interactome and its role in spermatogenesis. Liu Y, et al. Reproduction, 2019 Aug. PMID 31146259, Free PMC Article
    2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tigger transposable element-derived protein 2
    Names
    tigger transposable element derived 2 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081145.1 → NP_001074614.1  tigger transposable element-derived protein 2

      See identical proteins and their annotated locations for NP_001074614.1

      Status: PROVISIONAL

      Source sequence(s)
      AC124704
      Consensus CDS
      CCDS39500.1
      UniProtKB/Swiss-Prot
      Q0VBL1, Q505P7, Q6NV77
      Related
      ENSMUSP00000057223.4, ENSMUST00000062626.4
      Conserved Domains (3) summary
      pfam03184
      Location:207 → 385
      DDE_1; DDE superfamily endonuclease
      pfam03221
      Location:76 → 135
      HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
      cl21459
      Location:4 → 52
      HTH; Helix-turn-helix domains

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      59185855..59189018
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0VBL1.1 GenPept UniProtKB/Swiss-Prot:Q0VBL1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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