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    A20/AN1-like zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817304, updated on 18-Sep-2024

    Summary

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    Official Full Name
    A20/AN1-like zinc finger family protein
    Primary source
    TAIR:AT2G27580
    Locus tag
    AT2G27580
    See related
    Araport:AT2G27580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10A12.25; F10A12_25
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (11776410..11777553, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Lys Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene AAA-type ATPase family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptional Profiling Reveals a Time-of-Day-Specific Role of REVEILLE 4/8 in Regulating the First Wave of Heat Shock-Induced Gene Expression in Arabidopsis. Li B, et al. Plant Cell, 2019 Oct. PMID 31358650, Free PMC Article
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202691.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    A20/AN1-like zinc finger family protein
    NP_001189620.1
    • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1).
    NP_180326.1
    • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1072 Blast hits to 1061 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 454; Fungi - 10; Plants - 488; Viruses - 6; Other Eukaryotes - 114 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11776410..11777553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128317.5 → NP_180326.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180326.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZNU9
      UniProtKB/TrEMBL
      A0A178VV29, A0A5S9X1Y0
      Conserved Domains (2) summary
      smart00154
      Location:104 → 141
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:11 → 33
      zf-A20; A20-like zinc finger

    2. NM_001202691.1 → NP_001189620.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189620.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZNU9
      UniProtKB/TrEMBL
      A0A178VV29, A0A5S9X1Y0
      Conserved Domains (2) summary
      smart00154
      Location:104 → 141
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:11 → 33
      zf-A20; A20-like zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZNU9.1

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