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    TET2 tetraspanin2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816477, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TET2
    Official Full Name
    tetraspanin2
    Primary source
    TAIR:AT2G19580
    Locus tag
    AT2G19580
    See related
    Araport:AT2G19580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3P11.18; F3P11_18; tetraspanin2
    Summary
    Member of TETRASPANIN family
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    Genomic context

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    See TET2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (8472134..8475153, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene proteasome family protein Neighboring gene ncRNA Neighboring gene cytidine deaminase 1 Neighboring gene ncRNA Neighboring gene ACC oxidase 1 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis Tetraspanins Facilitate Virus Infection via Membrane-Recognition GCCK/RP Motif and Cysteine Residues. Zhu T, et al. Front Plant Sci, 2022. PMID 35310653, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_127516.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in auxin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetraspanin2
    NP_179548.1
    • tetraspanin2 (TET2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT5G46700.1); Has 515 Blast hits to 513 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8472134..8475153 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127516.4 → NP_179548.1  tetraspanin2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179548.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZUN5
      UniProtKB/TrEMBL
      A0A178VPS3, A0A5S9WZN7
      Conserved Domains (1) summary
      pfam00335
      Location:5 → 250
      Tetraspannin; Tetraspanin family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZUN5.1

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