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    XBCP3 xylem bark cysteine peptidase 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837517, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XBCP3
    Official Full Name
    xylem bark cysteine peptidase 3
    Primary source
    TAIR:AT1G09850
    Locus tag
    AT1G09850
    See related
    Araport:AT1G09850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21M12.24; F21M12_24; xylem bark cysteine peptidase 3
    Summary
    Arabidopsis thaliana papain-like cysteine peptidase
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    Genomic context

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    See XBCP3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (3201685..3204150)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Glycinamide ribonucleotide (GAR) synthetase Neighboring gene shaggy-like protein kinase 41 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene purine permease 16 Neighboring gene histidine acid phosphatase family protein Neighboring gene Rhamnogalacturonate lyase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100859.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    xylem bark cysteine peptidase 3
    NP_563855.1
    • xylem bark cysteine peptidase 3 (XBCP3); FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT5G43060.1); Has 8836 Blast hits to 8016 proteins in 749 species: Archae - 59; Bacteria - 272; Metazoa - 4224; Fungi - 4; Plants - 1933; Viruses - 132; Other Eukaryotes - 2212 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3201685..3204150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100859.3 → NP_563855.1  xylem bark cysteine peptidase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563855.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DU78, Q0WVJ5, Q93XC2
      Conserved Domains (3) summary
      smart00277
      Location:351 → 407
      GRAN; Granulin
      pfam00112
      Location:118 → 333
      Peptidase_C1; Papain family cysteine protease
      pfam08246
      Location:32 → 89
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
    Nucleotide Protein
    Heading Accession and Version

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