U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RAP2.7 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817403, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RAP2.7
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT2G28550
    Locus tag
    AT2G28550
    See related
    Araport:AT2G28550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    related to AP2.7; T17D12.11; T17D12_11; TARGET OF EARLY ACTIVATION TAGGED (EAT) 1; TOE1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RAP2.7 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (12225656..12228624, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene vacuolar proton ATPase A1 Neighboring gene RNA binding (RRM/RBD/RNP motifs) family protein Neighboring gene DNA repair (Rad51) family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A role for the gene regulatory module microRNA172/TARGET OF EARLY ACTIVATION TAGGED 1/FLOWERING LOCUS T (miRNA172/TOE1/FT) in the feeding sites induced by Meloidogyne javanica in Arabidopsis thaliana. Díaz-Manzano FE, et al. New Phytol, 2018 Jan. PMID 29105090, Free PMC Article
    2. MiR172b-TOE1/2 module regulates plant innate immunity in an age-dependent manner. Zou Y, et al. Biochem Biophys Res Commun, 2020 Oct 22. PMID 32807500
    3. Photoexcited Cryptochrome2 Interacts Directly with TOE1 and TOE2 in Flowering Regulation. Du SS, et al. Plant Physiol, 2020 Sep. PMID 32661061, Free PMC Article
    4. The GIGANTEA-regulated microRNA172 mediates photoperiodic flowering independent of CONSTANS in Arabidopsis. Jung JH, et al. Plant Cell, 2007 Sep. PMID 17890372, Free PMC Article
    5. The suppression of WRKY44 by GIGANTEA-miR172 pathway is involved in drought response of Arabidopsis thaliana. Han Y, et al. PLoS One, 2013. PMID 24223111, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The results showed that the regulatory module miRNA172/TOE1/FT plays an important role in correct giant cells and gall development, where miRNA172 is modulated by auxins.
      Title: A role for the gene regulatory module microRNA172/TARGET OF EARLY ACTIVATION TAGGED 1/FLOWERING LOCUS T (miRNA172/TOE1/FT) in the feeding sites induced by Meloidogyne javanica in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001202696.2
    NM_001336168.1
    NM_001336169.1
    NM_001336170.1
    NM_001336171.1
    NM_128415.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription corepressor binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of gene expression IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of innate immune response IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within plant organ morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    NP_001189625.1
    • related to AP2.7 (RAP2.7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activation tagged (EAT) 2 (TAIR:AT5G60120.1).
    NP_001318304.1
    • related to AP2.7 (RAP2.7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activation tagged (EAT) 2 (TAIR:AT5G60120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001323945.1
    • related to AP2.7
    NP_001323946.1
    • related to AP2.7
    NP_001323947.1
    • related to AP2.7
    NP_565674.1
    • related to AP2.7 (RAP2.7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activation tagged (EAT) 2 (TAIR:AT5G60120.1); Has 4895 Blast hits to 4529 proteins in 234 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 4802; Viruses - 9; Other Eukaryotes - 56 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12225656..12228624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128415.5 → NP_565674.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565674.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23109, Q3E7W2, Q9C5R2, Q9SK03
      UniProtKB/TrEMBL
      A0A5S9X233, A0A654EX04, A0A7G2EFT9
      Conserved Domains (2) summary
      smart00380
      Location:153 → 215
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
      cl00033
      Location:245 → 293
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

    2. NM_001202696.2 → NP_001189625.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189625.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EFT9, F4IIR3
      Conserved Domains (1) summary
      smart00380
      Location:245 → 308
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

    3. NM_001336169.1 → NP_001323947.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYL0

    4. NM_001336168.1 → NP_001318304.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYJ5

    5. NM_001336170.1 → NP_001323946.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRW6, A0A1P8AYM1

    6. NM_001336171.1 → NP_001323945.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYJ5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SK03.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.