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    autophagy-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818624, updated on 18-Sep-2024

    Summary

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    Official Full Name
    autophagy-like protein
    Primary source
    TAIR:AT2G40316
    Locus tag
    AT2G40316
    See related
    Araport:AT2G40316
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT2G40313; T7M7.21; T7M7_21
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (16836104..16839446)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Eukaryotic translation initiation factor 2 subunit 1 Neighboring gene ferritin 4 Neighboring gene Pectin lyase-like superfamily protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 33 Neighboring gene PYR1-like 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084560.1
    NM_129591.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    autophagy-like protein
    NP_001078029.1
    • FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 27 (InterPro:IPR018939); Has 135 Blast hits to 135 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 63; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    NP_181562.4
    • FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 27 (InterPro:IPR018939); Has 138 Blast hits to 138 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 62; Plants - 33; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16836104..16839446
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336828.1 → NP_001323518.1  autophagy-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q58FY5, Q84RK0

    2. NM_129591.5 → NP_181562.4  autophagy-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181562.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VYX3, A0A5S9X5P9, Q4PL95
      Conserved Domains (1) summary
      pfam09451
      Location:131 → 263
      ATG27; Autophagy-related protein 27

    3. NM_001084560.1 → NP_001078029.1  autophagy-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078029.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IH20, Q4PL94
      Conserved Domains (1) summary
      pfam09451
      Location:45 → 182
      ATG27; Autophagy-related protein 27
    Nucleotide Protein
    Heading Accession and Version

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