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    IAA5 indole-3-acetic acid inducible 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838128, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IAA5
    Official Full Name
    indole-3-acetic acid inducible 5
    Primary source
    TAIR:AT1G15580
    Locus tag
    AT1G15580
    See related
    Araport:AT1G15580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATAUX2-27; AUX2-27; AUXIN-INDUCIBLE 2-27; indole-3-acetic acid inducible 5; T16N11.9; T16N11_9
    Summary
    auxin induced protein
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    Genomic context

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    See IAA5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (5365512..5366497, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene CYCLIN A2;3 Neighboring gene E3 ubiquitin-protein ligase Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure and expression of two auxin-inducible genes from Arabidopsis. Conner TW, et al. Plant Mol Biol, 1990 Oct. PMID 2102379
    2. Identification of gravitropic response indicator genes in Arabidopsis inflorescence stems. Taniguchi M, et al. Plant Signal Behav, 2014. PMID 25763694, Free PMC Article
    3. Untethering the TIR1 auxin receptor from the SCF complex increases its stability and inhibits auxin response. Yu H, et al. Nat Plants, 2015 Mar. PMID 26236497, Free PMC Article
    4. A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin. Calderón Villalobos LI, et al. Nat Chem Biol, 2012 Apr 1. PMID 22466420, Free PMC Article
    5. Genetics of Aux/IAA and ARF action in plant growth and development. Liscum E, et al. Plant Mol Biol, 2002 Jun-Jul. PMID 12036262

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101427.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to auxin TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    indole-3-acetic acid inducible 5
    NP_173011.1
    • indole-3-acetic acid inducible 5 (IAA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 19 (TAIR:AT3G15540.1); Has 1807 Blast hits to 1806 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1806; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5365512..5366497 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101427.5 → NP_173011.1  indole-3-acetic acid inducible 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173011.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P33078, Q38823, Q8H1E0
      UniProtKB/TrEMBL
      A0A178W867, A0A384L3K6, D3K0C2, E1A758, E1A760
      Conserved Domains (1) summary
      pfam02309
      Location:13 → 159
      AUX_IAA; AUX/IAA family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P33078.3

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