U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840156, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    hydroxyproline-rich glycoprotein family protein
    Primary source
    TAIR:AT1G32610
    Locus tag
    AT1G32610
    See related
    Araport:AT1G32610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6N18.2; F6N18_2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (11795609..11797221, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene VQ motif-containing protein-like protein Neighboring gene pseudo Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene tRNA-Met Neighboring gene FAM50A-like protein Neighboring gene Basic helix-loop-helix (bHLH) DNA-binding family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001036052.2
    NM_001333014.1
    NM_102996.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    hydroxyproline-rich glycoprotein family protein
    NP_001031129.1
    • hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_174539.1
    • hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 506 Blast hits to 500 proteins in 131 species: Archae - 0; Bacteria - 7; Metazoa - 178; Fungi - 141; Plants - 111; Viruses - 9; Other Eukaryotes - 60 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11795609..11797221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102996.3 → NP_174539.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174539.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKW0, A0A5S9WN27, Q9LPK0
      Conserved Domains (1) summary
      pfam09770
      Location:22 → 117
      PAT1; Topoisomerase II-associated protein PAT1

    2. NM_001036052.2 → NP_001031129.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031129.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKW0, A0A5S9WN27, Q9LPK0
      Conserved Domains (1) summary
      pfam09770
      Location:22 → 117
      PAT1; Topoisomerase II-associated protein PAT1

    3. NM_001333014.1 → NP_001322551.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUC0, A0A5S9WN27
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.