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    DNA glycosylase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838533, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA glycosylase superfamily protein
    Primary source
    TAIR:AT1G19480
    Locus tag
    AT1G19480
    See related
    Araport:AT1G19480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O14.25; F18O14_25
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (6744353..6746635)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084094.2
    NM_101804.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in base-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA glycosylase superfamily protein
    NP_001077563.1
    • DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4597 Blast hits to 4597 proteins in 1093 species: Archae - 62; Bacteria - 2351; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink).
    NP_564085.1
    • DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62; Bacteria - 2357; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6744353..6746635
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101804.4 → NP_564085.1  DNA glycosylase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564085.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W048, A0A5S9V883, Q0V7V4
      Conserved Domains (1) summary
      COG0122
      Location:120 → 332
      AlkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair]

    2. NM_001084094.2 → NP_001077563.1  DNA glycosylase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077563.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W048, A0A654ECA2, Q56YU8
      Conserved Domains (1) summary
      COG0122
      Location:120 → 332
      AlkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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