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    FMN binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821082, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FMN binding protein
    Primary source
    TAIR:AT3G03890
    Locus tag
    AT3G03890
    See related
    Araport:AT3G03890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20H23.6; F20H23_6
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (999350..1002595, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene APR-like 5 Neighboring gene uncharacterized protein Neighboring gene sterol O-acyltransferase, putative (DUF1639) Neighboring gene adenosine-5'-phosphosulfate (APS) kinase 3 Neighboring gene ncRNA Neighboring gene glutamate dehydrogenase 3 Neighboring gene H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis locus AT3G03890 encodes a dimeric β-barrel protein implicated in heme degradation. Wang J, et al. Biochem J, 2020 Dec 7. PMID 33284325
    2. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111260.4
    NM_180178.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables heme binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within heme catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FMN binding protein
    NP_566216.1
    • FMN binding; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2470 (InterPro:IPR019595), FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002), Haem iron utilisation protein, pyridoxamine 5'-phosphate domain-containing (InterPro:IPR014599); BEST Arabidopsis thaliana protein match is: Pyridoxamine 5'-phosphate oxidase family protein (TAIR:AT3G21140.1); Has 807 Blast hits to 807 proteins in 287 species: Archae - 0; Bacteria - 489; Metazoa - 13; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
    NP_850509.1
    • FMN binding; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2470 (InterPro:IPR019595), FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002), Haem iron utilisation protein, pyridoxamine 5'-phosphate domain-containing (InterPro:IPR014599); BEST Arabidopsis thaliana protein match is: Pyridoxamine 5'-phosphate oxidase family protein (TAIR:AT3G21140.1); Has 770 Blast hits to 770 proteins in 270 species: Archae - 0; Bacteria - 458; Metazoa - 13; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      999350..1002595 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111260.4 → NP_566216.1  FMN binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566216.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X8X6, A0A654FEE0, Q8LDU1
      Conserved Domains (2) summary
      pfam10615
      Location:240 → 314
      DUF2470; Protein of unknown function (DUF2470)
      cl00381
      Location:88 → 228
      PNPOx/FlaRed_like; Pyridoxine 5'-phosphate (PNP) oxidase-like and flavin reductase-like proteins

    2. NM_180178.2 → NP_850509.1  FMN binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850509.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FEE0, Q93WM0
      Conserved Domains (2) summary
      pfam10615
      Location:239 → 305
      DUF2470; Protein of unknown function (DUF2470)
      cl00381
      Location:88 → 228
      PNPOx/FlaRed_like; Pyridoxine 5'-phosphate (PNP) oxidase-like and flavin reductase-like proteins
    Nucleotide Protein
    Heading Accession and Version

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