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    ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821145, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
    Primary source
    TAIR:AT3G03790
    Locus tag
    AT3G03790
    See related
    Araport:AT3G03790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20H23.18; F20H23_18
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (961750..968152)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene methionine synthase 2 Neighboring gene syntaxin of plants 131 Neighboring gene O-fucosyltransferase family protein Neighboring gene SAUR-like auxin-responsive protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202873.1
    NM_111250.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
    NP_001189802.1
    • ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1).
    NP_187029.2
    • ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 47493 Blast hits to 19299 proteins in 916 species: Archae - 174; Bacteria - 5076; Metazoa - 23213; Fungi - 3118; Plants - 3847; Viruses - 203; Other Eukaryotes - 11862 (source: NCBI BLink).
    NP_974213.1
    • ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      961750..968152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202484.2 → NP_974213.1  ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974213.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X946, F4J2C5
      Conserved Domains (4) summary
      COG5184
      Location:140 → 477
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      sd00045
      Location:29 → 59
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:29 → 126
      Ank_2; Ankyrin repeats (3 copies)
      cl28903
      Location:582 → 613
      BACK; BACK (BTB and C-terminal Kelch) domain

    2. NM_001202873.1 → NP_001189802.1  ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189802.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X946, F4J2C4
      Conserved Domains (5) summary
      cd00204
      Location:29 → 137
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd14821
      Location:586 → 615
      SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
      pfam00415
      Location:264 → 311
      RCC1; Regulator of chromosome condensation (RCC1) repeat
      pfam12796
      Location:29 → 126
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:29 → 59
      ANK; ANK repeat [structural motif]

    3. NM_111250.2 → NP_187029.2  ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187029.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J2C6, Q8GZ56
      Conserved Domains (5) summary
      cd00204
      Location:29 → 137
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cd14821
      Location:583 → 612
      SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
      pfam00415
      Location:261 → 308
      RCC1; Regulator of chromosome condensation (RCC1) repeat
      pfam12796
      Location:29 → 126
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:29 → 59
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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