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    EDA30 O-fucosyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821131, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EDA30
    Official Full Name
    O-fucosyltransferase family protein
    Primary source
    TAIR:AT3G03810
    Locus tag
    AT3G03810
    See related
    Araport:AT3G03810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo sac development arrest 30; F20H23.17; F20H23_17
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    Genomic context

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    See EDA30 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (971648..976414, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene methionine synthase 2 Neighboring gene ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein Neighboring gene syntaxin of plants 131 Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Boavida LC, et al. Genetics, 2009 Apr. PMID 19237690, Free PMC Article
    2. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
    3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001337489.1
    NM_111252.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within polar nucleus fusion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in chloroplast HDA PubMed 

    General protein information

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    Preferred Names
    O-fucosyltransferase family protein
    NP_187031.2
    • embryo sac development arrest 30 (EDA30); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, polar nucleus fusion, pollen tube development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G30300.1); Has 810 Blast hits to 792 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 810; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      971648..976414 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111252.5 → NP_187031.2  O-fucosyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187031.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J2C8, Q0WS93, Q9SRV8
      UniProtKB/TrEMBL
      A0A178VES3
      Conserved Domains (1) summary
      cd11299
      Location:92 → 506
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

    2. NM_001337489.1 → NP_001325638.1  O-fucosyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J2C8, Q0WS93, Q9SRV8
      UniProtKB/TrEMBL
      A0A178VES3
      Conserved Domains (1) summary
      cd11299
      Location:92 → 506
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J2C8.1

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