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    Protein prenylyltransferase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819643, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Protein prenylyltransferase superfamily protein
    Primary source
    TAIR:AT3G04830
    Locus tag
    AT3G04830
    See related
    Araport:AT3G04830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9J14.22; T9J14_22
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (1326121..1329364)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene NIMA-related kinase 2 Neighboring gene ncRNA Neighboring gene Pseudouridine synthase family protein Neighboring gene Ribosomal protein S3Ae Neighboring gene Tesmin/TSO1-like CXC domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111355.3
    NM_180664.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Protein prenylyltransferase superfamily protein
    NP_566239.2
    • Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G28220.1); Has 523 Blast hits to 519 proteins in 216 species: Archae - 31; Bacteria - 43; Metazoa - 200; Fungi - 109; Plants - 58; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
    NP_850995.1
    • Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G28220.1); Has 554 Blast hits to 546 proteins in 223 species: Archae - 33; Bacteria - 51; Metazoa - 210; Fungi - 111; Plants - 58; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1326121..1329364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180664.3 → NP_850995.1  Protein prenylyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850995.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFH9, A0A384LJD8, A0A7G2EFN1, Q9CAU9
      Conserved Domains (1) summary
      sd00006
      Location:102 → 126
      TPR; TPR repeat [structural motif]

    2. NM_111355.3 → NP_566239.2  Protein prenylyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566239.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EFN1, Q93WC8
      Conserved Domains (1) summary
      sd00006
      Location:98 → 122
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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