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    transmembrane protein (DUF872) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822567, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein (DUF872)
    Primary source
    TAIR:AT3G29170
    Locus tag
    AT3G29170
    See related
    Araport:AT3G29170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (11135951..11138010, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene SNF1 kinase homolog 11 Neighboring gene uncharacterized protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001339011.1
    NM_113840.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein (DUF872)
    NP_566844.1
    • Eukaryotic protein of unknown function (DUF872); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0414, transmembrane (InterPro:IPR008590); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF872) (TAIR:AT2G19350.1); Has 245 Blast hits to 245 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      11135951..11138010 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113840.3 → NP_566844.1  transmembrane protein (DUF872) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566844.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJ87, A0A384KZ78, Q9LVP2
      Conserved Domains (1) summary
      pfam05915
      Location:9 → 121
      DUF872; Eukaryotic protein of unknown function (DUF872)

    2. NM_001339011.1 → NP_001326507.1  transmembrane protein (DUF872) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJ87, A0A384KZ78, Q9LVP2
      Conserved Domains (1) summary
      pfam05915
      Location:9 → 121
      DUF872; Eukaryotic protein of unknown function (DUF872)
    Nucleotide Protein
    Heading Accession and Version

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