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    UBP7 ubiquitin carboxyl-terminal hydrolase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821682, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBP7
    Official Full Name
    ubiquitin carboxyl-terminal hydrolase
    Primary source
    TAIR:AT3G21280
    Locus tag
    AT3G21280
    See related
    Araport:AT3G21280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ubiquitin-specific protease 7
    Summary
    Encodes a ubiquitin-specific protease.
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    Genomic context

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    See UBP7 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Sequence:
    Chromosome: 3; NC_003074.8 (7477930..7482125, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene DOF zinc finger protein 2 Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene RNA methyltransferase family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338521.1
    NM_113023.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase
    NP_566680.2
    • ubiquitin-specific protease 7 (UBP7); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 6 (TAIR:AT1G51710.1); Has 4498 Blast hits to 4321 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 2376; Fungi - 767; Plants - 642; Viruses - 2; Other Eukaryotes - 711 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7477930..7482125 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113023.4 → NP_566680.2  ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566680.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLU8, A0A5S9XFT1
      Conserved Domains (2) summary
      cd02657
      Location:160 → 526
      Peptidase_C19A; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl ...
      cd16104
      Location:56 → 130
      Ubl_USP14_like; ubiquitin-like (Ubl) domain found in ubiquitin carboxyl-terminal hydrolase 14 (USP14) and similar proteins

    2. NM_001338521.1 → NP_001325430.1  ubiquitin carboxyl-terminal hydrolase, partial [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IXI8, Q84WC6, Q9FPT3, Q9LU31
      UniProtKB/TrEMBL
      A0A1I9LL79, A0A7G2EK69
    Nucleotide Protein
    Heading Accession and Version

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