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    HSL1 HSI2-like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829332, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HSL1
    Official Full Name
    HSI2-like 1
    Primary source
    TAIR:AT4G32010
    Locus tag
    AT4G32010
    See related
    Araport:AT4G32010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10N7.180; F10N7_180; HSI2-L1; HSI2-like 1; VAL2; VP1/ABI3-LIKE 2
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    Genomic context

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    See HSL1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Sequence:
    Chromosome: 4; NC_003075.7 (15479379..15485354)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene aspartate aminotransferase 5 Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene serine/arginine repetitive matrix-like protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The transcriptional repressors VAL1 and VAL2 recruit PRC2 for genome-wide Polycomb silencing in Arabidopsis. Yuan L, et al. Nucleic Acids Res, 2021 Jan 11. PMID 33270882, Free PMC Article
    2. HISTONE DEACETYLASE19 interacts with HSL1 and participates in the repression of seed maturation genes in Arabidopsis seedlings. Zhou Y, et al. Plant Cell, 2013 Jan. PMID 23362207, Free PMC Article
    3. Two B3 domain transcriptional repressors prevent sugar-inducible expression of seed maturation genes in Arabidopsis seedlings. Tsukagoshi H, et al. Proc Natl Acad Sci U S A, 2007 Feb 13. PMID 17267611, Free PMC Article
    4. VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms. Fouracre JP, et al. PLoS Genet, 2021 Jun. PMID 34181637, Free PMC Article
    5. Co-repressors AtSDR4L and DIG1 interact with transcription factor VAL2 and promote Arabidopsis seed-to-seedling transition. Lu B, et al. Plant Physiol, 2024 Jul 31. PMID 38652698, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Co-repressors AtSDR4L and DIG1 interact with transcription factor VAL2 and promote Arabidopsis seed-to-seedling transition.
      Title: Co-repressors AtSDR4L and DIG1 interact with transcription factor VAL2 and promote Arabidopsis seed-to-seedling transition.
    2. VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms.
      Title: VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms.
    3. The transcriptional repressors VAL1 and VAL2 recruit PRC2 for genome-wide Polycomb silencing in Arabidopsis.
      Title: The transcriptional repressors VAL1 and VAL2 recruit PRC2 for genome-wide Polycomb silencing in Arabidopsis.
    4. HDA19 and HSL1 may act together to repress seed maturation gene expression during germination. HDA19 and HSL1 may play a vital role during embryogenesis.
      Title: HISTONE DEACETYLASE19 interacts with HSL1 and participates in the repression of seed maturation genes in Arabidopsis seedlings.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001342124.1
    NM_119353.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of seed germination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of seed maturation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HSI2-like 1
    NP_194929.2
    • HSI2-like 1 (HSL1); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: high-level expression of sugar-inducible gene 2 (TAIR:AT2G30470.1); Has 1397 Blast hits to 1364 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 0; Plants - 1204; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15479379..15485354
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119353.4 → NP_194929.2  HSI2-like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194929.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49390, Q0WSC1, Q5CCK4
      UniProtKB/TrEMBL
      A0A7G2F5E7
      Conserved Domains (2) summary
      cd10017
      Location:284 → 385
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:521 → 563
      zf-CW; CW-type Zinc Finger

    2. NM_001342124.1 → NP_001329752.1  HSI2-like 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US60
      Conserved Domains (2) summary
      cd10017
      Location:280 → 381
      B3_DNA; Plant-specific B3-DNA binding domain
      pfam07496
      Location:517 → 559
      zf-CW; CW-type Zinc Finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5CCK4.1

    Gene LinkOut

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