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    Early-responsive to dehydration stress protein (ERD4) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824616, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Early-responsive to dehydration stress protein (ERD4)
    Primary source
    TAIR:AT3G54510
    Locus tag
    AT3G54510
    See related
    Araport:AT3G54510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (20180007..20183588)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RNA polymerase II fifth largest subunit, E Neighboring gene agglutinin-like protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001125365.2
    NM_001339677.1
    NM_001339678.1
    NM_001339679.1
    NM_001339680.1
    NM_115308.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Early-responsive to dehydration stress protein (ERD4)
    NP_001118837.1
    • Early-responsive to dehydration stress protein (ERD4); LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: hypothetical protein 1 (TAIR:AT3G01100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_191015.2
    • Early-responsive to dehydration stress protein (ERD4); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: hypothetical protein 1 (TAIR:AT3G01100.1); Has 1250 Blast hits to 1225 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 586; Plants - 385; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20180007..20183588
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125365.2 → NP_001118837.1  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118837.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JCY2, Q9M1H6
      UniProtKB/TrEMBL
      A0A097NUQ7, A0A178VE78, A0A384KJE0
      Conserved Domains (2) summary
      COG5594
      Location:6 → 683
      COG5594; Uncharacterized integral membrane protein [Function unknown]
      pfam02714
      Location:350 → 616
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate

    2. NM_001339678.1 → NP_001325839.1  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H4A0

    3. NM_001339677.1 → NP_001325838.1  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMF9

    4. NM_115308.3 → NP_191015.2  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191015.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H4A0
      Conserved Domains (2) summary
      pfam02714
      Location:203 → 522
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
      pfam13967
      Location:1 → 73
      RSN1_TM; Late exocytosis, associated with Golgi transport

    5. NM_001339679.1 → NP_001325836.1  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMF7

    6. NM_001339680.1 → NP_001325837.1  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMF8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JCY2.1

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