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    SET domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824674, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SET domain-containing protein
    Primary source
    TAIR:AT3G55080
    Locus tag
    AT3G55080
    See related
    Araport:AT3G55080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    15
    Sequence:
    Chromosome: 3; NC_003074.8 (20411342..20416043, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene CAP-gly domain linker Neighboring gene LisH/CRA/RING-U-box domains-containing protein Neighboring gene ABC-2 type transporter family protein Neighboring gene ABC-2 type transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035787.3
    NM_001339718.1
    NM_001339719.1
    NM_115366.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein-lysine N-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SET domain-containing protein
    NP_001030864.1
    • SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_191068.2
    • SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 1136 Blast hits to 1133 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 243; Fungi - 329; Plants - 401; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20411342..20416043 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339717.1 → NP_001326791.1  SET domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQC8, A0A654FG18
      Conserved Domains (2) summary
      cd19179
      Location:1 → 198
      SET_RBCMT; SET domain found in chloroplastic ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase (RBCMT) and similar proteins
      pfam09273
      Location:262 → 360
      Rubis-subs-bind; Rubisco LSMT substrate-binding

    2. NM_115366.4 → NP_191068.2  SET domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191068.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XMM6, A0A654FG18, Q5PP40
      Conserved Domains (2) summary
      cd19179
      Location:59 → 282
      SET_RBCMT; SET domain found in chloroplastic ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase (RBCMT) and similar proteins
      pfam09273
      Location:346 → 444
      Rubis-subs-bind; Rubisco LSMT substrate-binding

    3. NM_001339718.1 → NP_001326790.1  SET domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQC7
      Conserved Domains (2) summary
      cd19179
      Location:1 → 167
      SET_RBCMT; SET domain found in chloroplastic ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase (RBCMT) and similar proteins
      pfam09273
      Location:231 → 329
      Rubis-subs-bind; Rubisco LSMT substrate-binding

    4. NM_001339719.1 → NP_001326792.1  SET domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQC8, A0A654FG18
      Conserved Domains (2) summary
      cd19179
      Location:1 → 198
      SET_RBCMT; SET domain found in chloroplastic ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase (RBCMT) and similar proteins
      pfam09273
      Location:262 → 360
      Rubis-subs-bind; Rubisco LSMT substrate-binding

    5. NM_001035787.3 → NP_001030864.1  SET domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030864.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q67YE9
      Conserved Domains (1) summary
      pfam09273
      Location:236 → 334
      Rubis-subs-bind; Rubisco LSMT substrate-binding
    Nucleotide Protein
    Heading Accession and Version

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