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    XIJ P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824985, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XIJ
    Official Full Name
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Primary source
    TAIR:AT3G58160
    Locus tag
    AT3G58160
    See related
    Araport:AT3G58160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATMYOS3; ATXIJ; MYA3; MYOSIN A3; MYOSIN XI J; MYOSIN XI-16; XI-16
    Summary
    Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants
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    Genomic context

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    See XIJ in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    26
    Sequence:
    Chromosome: 3; NC_003074.8 (21534064..21542127)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene ncRNA Neighboring gene N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein Neighboring gene phenylalanyl-tRNA synthetase class IIc family protein Neighboring gene Optic atrophy 3 protein (OPA3) Neighboring gene tRNA-Gly Neighboring gene BET1P/SFT1P-like protein 14A Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular analysis of the myosin gene family in Arabidopsis thaliana. Kinkema M, et al. Plant Mol Biol, 1994 Nov. PMID 7811972
    2. Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence. Reddy AS, et al. Genome Biol, 2001. PMID 11516337, Free PMC Article
    3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001339909.1
    NM_001339912.1
    NM_115678.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cytoskeletal motor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament-based movement TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    part_of myosin complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    NP_001319790.1
    • XIJ; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex, vacuole; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 12832 Blast hits to 9780 proteins in 894 species: Archae - 19; Bacteria - 223; Metazoa - 7630; Fungi - 1066; Plants - 790; Viruses - 83; Other Eukaryotes - 3021 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21534064..21542127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339911.1 → NP_001327764.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCK3, A0A1I9LTB4

    2. NM_001339910.1 → NP_001327763.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCK3, A0A1I9LTB3, A0A654FIU3

    3. NM_001339909.1 → NP_001319790.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39159, Q9M2K0
      UniProtKB/TrEMBL
      A0A178VCK3, A0A5S9XM37, A0A654FIU3
      Conserved Domains (4) summary
      smart00015
      Location:829 → 849
      IQ; Calmodulin-binding motif
      cd01384
      Location:74 → 717
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:9 → 46
      Myosin_N; Myosin N-terminal SH3-like domain
      cl27170
      Location:1081 → 1142
      DUF460; Protein of unknown function (DUF460)

    4. NM_001339912.1 → NP_001327762.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCK3, A0A1I9LTB4

    5. NM_115678.2 → NP_191375.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191375.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39159, Q9M2K0
      UniProtKB/TrEMBL
      A0A178VCK3, A0A5S9XM37, A0A654FIU3
      Conserved Domains (4) summary
      smart00015
      Location:829 → 849
      IQ; Calmodulin-binding motif
      cd01384
      Location:74 → 717
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:9 → 46
      Myosin_N; Myosin N-terminal SH3-like domain
      cl27170
      Location:1081 → 1142
      DUF460; Protein of unknown function (DUF460)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M2K0.1

    Gene LinkOut

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