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    GroES-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825191, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GroES-like family protein
    Primary source
    TAIR:AT3G60210
    Locus tag
    AT3G60210
    See related
    Araport:AT3G60210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27H5.5
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (22251047..22252899, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DYNAMIN-like 1E Neighboring gene uncharacterized protein Neighboring gene TOXICOS EN LEVADURA 4 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Cpn10(1) co-chaperonin of A. thaliana functions only as a hetero-oligomer with Cpn20. Vitlin Gruber A, et al. PLoS One, 2014. PMID 25419702, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115884.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    GroES-like family protein
    NP_191580.1
    • GroES-like family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: chloroplast chaperonin 10 (TAIR:AT2G44650.1); Has 3302 Blast hits to 3296 proteins in 900 species: Archae - 7; Bacteria - 1960; Metazoa - 11; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 1153 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22251047..22252899 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115884.3 → NP_191580.1  GroES-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191580.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M1C2
      UniProtKB/TrEMBL
      A0A178VCQ5, A0A5S9XMN2
      Conserved Domains (1) summary
      pfam00166
      Location:50 → 137
      Cpn10; Chaperonin 10 Kd subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1C2.1

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