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    PTR5 peptide transporter 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831725, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PTR5
    Official Full Name
    peptide transporter 5
    Primary source
    TAIR:AT5G01180
    Locus tag
    AT5G01180
    See related
    Araport:AT5G01180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5; AtNPF8.2; ATPTR5; F7J8.160; F7J8_160; NPF8.2; NRT1/ PTR family 8.2; peptide transporter 5; peptide transporter 5
    Summary
    Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane.
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    Genomic context

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    See PTR5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (61017..63936, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene hypothetical protein (DUF740) Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene laccase 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtPTR1 and AtPTR5 transport dipeptides in planta. Komarova NY, et al. Plant Physiol, 2008 Oct. PMID 18753286, Free PMC Article
    2. Functional properties of the Arabidopsis peptide transporters AtPTR1 and AtPTR5. Hammes UZ, et al. J Biol Chem, 2010 Dec 17. PMID 20937801, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001342576.1
    NM_001342577.1
    NM_120196.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables dipeptide transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within dipeptide transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptide transporter 5
    NP_195738.1
    • peptide transporter 5 (PTR5); CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 1 (TAIR:AT3G54140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      61017..63936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120196.4 → NP_195738.1  peptide transporter 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195738.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WR84, Q84TJ5, Q9LFB8
      UniProtKB/TrEMBL
      A0A178UNZ4, A0A654FXB6
      Conserved Domains (1) summary
      cd17418
      Location:29 → 561
      MFS_NPF8; NRT1/PTR family (NPF), subfamily 8 of the Major Facilitator Superfamily of transporters

    2. NM_001342576.1 → NP_001331271.1  peptide transporter 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WR84, Q84TJ5, Q9LFB8
      UniProtKB/TrEMBL
      A0A178UNZ4, A0A654FXB6
      Conserved Domains (1) summary
      cd17418
      Location:29 → 561
      MFS_NPF8; NRT1/PTR family (NPF), subfamily 8 of the Major Facilitator Superfamily of transporters

    3. NM_001342577.1 → NP_001331272.1  peptide transporter 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WR84, Q84TJ5, Q9LFB8
      UniProtKB/TrEMBL
      A0A178UNZ4, A0A654FXB6
      Conserved Domains (1) summary
      cd17418
      Location:29 → 561
      MFS_NPF8; NRT1/PTR family (NPF), subfamily 8 of the Major Facilitator Superfamily of transporters
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LFB8.1

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