U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    VAMP713 vesicle-associated membrane protein 713 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830984, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    VAMP713
    Official Full Name
    vesicle-associated membrane protein 713
    Primary source
    TAIR:AT5G11150
    Locus tag
    AT5G11150
    See related
    Araport:AT5G11150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATVAMP713; F2I11.40; F2I11_40; vesicle-associated membrane protein 713
    Summary
    Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See VAMP713 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (3546200..3548117, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Exostosin family protein Neighboring gene phospholipase-like protein (PEARLI 4) family protein Neighboring gene adenine phosphoribosyltransferase 5 Neighboring gene DEAD/DEAH box RNA helicase family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Suppression of Arabidopsis vesicle-SNARE expression inhibited fusion of H2O2-containing vesicles with tonoplast and increased salt tolerance. Leshem Y, et al. Proc Natl Acad Sci U S A, 2006 Nov 21. PMID 17101982, Free PMC Article
    2. The longin domain regulates subcellular targeting of VAMP7 in Arabidopsis thaliana. Uemura T, et al. FEBS Lett, 2005 May 23. PMID 15876431
    3. Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis. Takemoto K, et al. Proc Natl Acad Sci U S A, 2018 Mar 6. PMID 29463724, Free PMC Article
    4. Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Szponarski W, et al. Proteomics, 2004 Feb. PMID 14760709
    5. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001343158.1
    NM_121153.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    part_of HOPS complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in vacuolar membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in vacuole HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    vesicle-associated membrane protein 713
    NP_196676.1
    • vesicle-associated membrane protein 713 (VAMP713); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: vacuolar membrane, vacuole, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 711 (TAIR:AT4G32150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3546200..3548117 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121153.5 → NP_196676.1  vesicle-associated membrane protein 713 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196676.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LFP1
      UniProtKB/TrEMBL
      A0A178UF45, A0A7G2F9U8
      Conserved Domains (2) summary
      cd14824
      Location:4 → 119
      Longin; longin domain
      pfam00957
      Location:124 → 212
      Synaptobrevin

    2. NM_001343158.1 → NP_001331552.1  vesicle-associated membrane protein 713 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEB3, A0A5S9Y409, A0A7G2F9U8
      Conserved Domains (2) summary
      cd14824
      Location:4 → 119
      Longin; longin domain
      pfam00957
      Location:124 → 212
      Synaptobrevin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LFP1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools