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    ATP-dependent RNA helicase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833980, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP-dependent RNA helicase
    Primary source
    TAIR:AT5G39840
    Locus tag
    AT5G39840
    See related
    Araport:AT5G39840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K13H13.20; K13H13_20
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (15946566..15949422)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 94 Neighboring gene Trypsin family protein with PDZ domain-containing protein Neighboring gene Ribosomal protein S4 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123347.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase
    NP_198800.1
    • ATP-dependent RNA helicase, mitochondrial, putative; FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial degradasome RNA helicase subunit C-terminal (InterPro:IPR022192), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, mitochondrial (SUV3) (TAIR:AT4G14790.1); Has 4068 Blast hits to 4044 proteins in 754 species: Archae - 43; Bacteria - 1236; Metazoa - 267; Fungi - 388; Plants - 157; Viruses - 16; Other Eukaryotes - 1961 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15946566..15949422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123347.2 → NP_198800.1  ATP-dependent RNA helicase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198800.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KFV7, Q9FLF1
      UniProtKB/TrEMBL
      A0A178U896, A0A654G7H7
      Conserved Domains (4) summary
      cd18805
      Location:419 → 554
      SF2_C_suv3; C-terminal helicase domain of ATP-dependent RNA helicase
      cd17913
      Location:274 → 415
      DEXQc_Suv3; DEXQ-box helicase domain of Suv3
      pfam18147
      Location:625 → 666
      Suv3_C_1; Suv3 C-terminal domain 1
      pfam12513
      Location:690 → 735
      SUV3_C; Mitochondrial degradasome RNA helicase subunit C terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4KFV7.1

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