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    HD domain-containing metal-dependent phosphohydrolase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834027, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HD domain-containing metal-dependent phosphohydrolase family protein
    Primary source
    TAIR:AT5G40290
    Locus tag
    AT5G40290
    See related
    Araport:AT5G40290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSN9.190; MSN9_190
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    19
    Sequence:
    Chromosome: 5; NC_003076.8 (16105259..16108501, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Prenyltransferase family protein Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene Exonuclease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HD domain-containing metal-dependent phosphohydrolase family protein
    NP_198845.1
    • HD domain-containing metal-dependent phosphohydrolase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: HD domain-containing metal-dependent phosphohydrolase family protein (TAIR:AT5G40270.1); Has 2645 Blast hits to 2636 proteins in 969 species: Archae - 283; Bacteria - 1672; Metazoa - 168; Fungi - 16; Plants - 55; Viruses - 3; Other Eukaryotes - 448 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16105259..16108501 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123393.1 → NP_198845.1  HD domain-containing metal-dependent phosphohydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198845.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIR9, A0A5S9Y9J1, F4KHB6
      Conserved Domains (1) summary
      COG1078
      Location:19 → 434
      YdhJ; HD superfamily phosphohydrolase [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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