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    Peptidase S41 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834682, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Peptidase S41 family protein
    Primary source
    TAIR:AT5G46390
    Locus tag
    AT5G46390
    See related
    Araport:AT5G46390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MPL12.19; MPL12_19
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (18816585..18819462)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ca2+ activated outward rectifying K+ channel 2 Neighboring gene Serine/Threonine-kinase, putative (DUF1296) Neighboring gene uncharacterized protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124009.2
    NM_203164.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast thylakoid lumen HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in thylakoid lumen HDA PubMed 

    General protein information

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    Preferred Names
    Peptidase S41 family protein
    NP_199451.2
    • Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974893.1
    • Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18816585..18819462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_203164.3 → NP_974893.1  Peptidase S41 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974893.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KHG6, Q8W484, Q9FL23
      UniProtKB/TrEMBL
      A0A178UN93, A0A5S9YC27
      Conserved Domains (3) summary
      cd07560
      Location:307 → 466
      Peptidase_S41_CPP; C-terminal processing peptidase; serine protease family S41
      cd00988
      Location:197 → 286
      PDZ_CTP_protease; PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for ...
      TIGR00225
      Location:151 → 466
      prc; C-terminal peptidase (prc)

    2. NM_124009.2 → NP_199451.2  Peptidase S41 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199451.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UN93, A0A5S9YC27
      Conserved Domains (2) summary
      cd00988
      Location:197 → 286
      PDZ_CTP_protease; PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for ...
      cl02526
      Location:276 → 395
      Peptidase_S41; C-terminal processing peptidase family S41
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4KHG6.1

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