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    AGD9 ARF-GAP domain 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834718, updated on 18-Sep-2024

    Summary

    Official Symbol
    AGD9
    Official Full Name
    ARF-GAP domain 9
    Primary source
    TAIR:AT5G46750
    Locus tag
    AT5G46750
    See related
    Araport:AT5G46750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGD8; ARF-GAP domain 8; ARF-GAP domain 9; MZA15.17; MZA15_17
    Summary
    A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
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    Genomic context

    See AGD9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (18969736..18971981, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene glycine-rich protein Neighboring gene ubiquitin-specific protease 21 Neighboring gene Basic helix-loop-helix (bHLH) DNA-binding family protein Neighboring gene uncharacterized protein

    Interactions

    General gene information

    NM_124045.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    NOT located_in cytosol PubMed 
    located_in nucleus  
    located_in plastid PubMed 

    General protein information

    Preferred Names
    ARF-GAP domain 9
    NP_199487.1
    • ARF-GAP domain 9 (AGD9); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 8 (TAIR:AT4G17890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18969736..18971981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124045.5 → NP_199487.1  ARF-GAP domain 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199487.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FIQ0
      UniProtKB/TrEMBL
      A0A178UAW4, A0A5S9YDY9
      Conserved Domains (1) summary
      PLN03114
      Location:1 → 394
      PLN03114; ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
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